Fan Zhang

Question about squared_distance fucntion

1

Hi! First of all, thanks for providing this nice work! While I am looking into the code, I found the _squared_distance_ function is a little bit confusing. If Y is...

This problems happens a lot (almost always, as I remember). Save a scene including fiber tracts as an MRB file. Then, clean the scene or open a new instance of...

As in the issue title.

There are two scripts for endpoint analysis. We have performed tract selection using WMQL, so these scripts will not be used in the near future. Consider to move these scripts...

vtk version

1

We need to update the code to handle the latest vtk version (not in rush). For now, we can update the vtk installation command 'conda install vtk' to ask conda...

Add SlicerTractParcellation extension

5

# New extension - [x] Extension has a reasonable name (not too general, not too narrow, suggests what the extension is for) - [x] Repository name is Slicer+ExtensionName - [x]...

Thanks, @ljod ! This corresponds to a new release: https://github.com/SlicerDMRI/ORG-Atlases/releases/tag/v1.1.1 Regards, Fan

Hi @ljod, Could you check and merge the changes? One of our paper reviewers was asking details about viewing the atlas files on this page. Thank you! Regards, Fan