Zeynep Akdeniz

I see but still, it didn't help with my case. I am suspicious of my tree file as I've used the direct output from Orthofinder without trying to make it...

Okay, I've made an ultrametric tree and used only 8 cores but still, Cafe has been running for 17 hours with 14 000 orthogroups. Now my ultrametric tree looks like...

So far it has generated around 45 lambda values and doesn't seem to be approaching any particular value. Below are the lambda values near the end:  Why do you...

I've tried all the blast versions with conda and mamba. I set the order of the channels in .condarc BUT nothing worked. Does anyone know why the following doesn't work...