zcrself

Results 21 comments of zcrself

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

> Dear @cgjosephlee and @ncgrjsmiao , > i did build a new image with some change. It looks that i fix the problems. > you can try by running: >...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

**Exit at "MOVING IMPORTANT FILES"** ###PASA STARTS AT: 08:09:28 06-04 ### ###AUGUSTUS, GENEMARK-ES AND AAT STARTED AT:08:47:55 06-04 ### ###RUNNING AUGUSTUS ### ###RUNNING AAT ### ###RUNNING GENEMARK ### ###CONVERTING AUGUSTUS...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

**ls -l /db2/ncgr/maozhu/Partial_Test/LoReAn_annotation/run/PASA/:** drwxr-xr-x 8 ncgr ncgr 4096 Apr 6 16:47 ./ drwxr-xr-x 14 ncgr ncgr 4096 Apr 6 22:29 ../ -rw-r--r-- 1 ncgr ncgr 239 Apr 6 16:09 alignAssembly.config...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

> is this the output after that you re-downloaded the image? **I have download docker://lfaino/lorean some days ago, Because you update your docker image, then I download this lfaino/lorean:noiIPRS image...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

This is the output after I download this image docker://lfaino/lorean:noiIPRS firstly Could you tell me that the differences between docker://lfaino/lorean and docker://lfaino/lorean:noiIPRS? On Sun, Apr 7, 2019 at 3:47 AM...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

Thank for your good job and quick reply. Now I re-download docker://lfaino/lorean:noIPRS, then re-run my job. Tomorrow I will tell you my result of running lorean:noIPRS! Best regards! On Sun,...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

Using the image docker://lfaino/lorean:noIPRS Errors as follows: ###RUNNING iASSEMBLER 02:07:27 08-04 ### Traceback (most recent call last): File "/opt/LoReAn/code//lorean.py", line 563, in main() File "/opt/LoReAn/code//lorean.py", line 440, in main adapter_value,...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

My running command list is : " nohup lorean.py -a -rp repeats.fix.bed -sr clean_R_1.fastq,clean_R_2.fastq -lr Long.fasta -pr rice_bamboo_prot.fasta -sp bamboo test_scaffold.fa -d -f -mg -t 4 --keep_tmp 1>1.out 2>2.out &"...

prepareEvmInputs.py, NameError

Using short reads and long reads On Mon, May 13, 2019 at 4:51 PM Luigi Faino wrote: > Hi @zcrself , > sorry if I answer so late. > are...

prepareEvmInputs.py, NameError

Only evm_input folder, I have tared it. http://119.78.67.235/doc/maozhu/evm.tar.bz2 No evm_output folder On Mon, May 13, 2019 at 5:05 PM Luigi Faino wrote: > and the content of evm_input and evm_output...