Zach Marin

If I run `pip install python-bioformats` or `python setup.py develop` in a cloned `python-bioformats` on my mac (macOS Catalina 10.15.7/python 3.7), the installation fails, and I get the following traceback....

If open a LIF file with `im = bioformats.ImageReader` and then run `javabridge.jutil.jdictionary_to_string_dictionary(im.rdr.getGlobalMetadata())` I get an empty dictionary. However, `javabridge.jutil.jdictionary_to_string_dictionary(im.rdr.getSeriesMetadata())` works just fine. Am I misusing `getGlobalMetadata()`, or is this...

Ctypes implementation of KIM001

2

Here is a `ctypes` implementation of the KIM001 that I wrote for one of our scopes. It is currently in use by us. Is this useful for this repo? I...

Write more metadata

1

When I set up metadata, I wrote in the minimum needed for proof of concept. There's lots of information available that we currently don't write to the image files (i.e....

Add ability to set arbitrary ROI

2

By default, we cut about the middle of the FOV. However, it is perfectly reasonable to create an ROI from, say, `(500, 430)` to `(700, 490)` or something similarly random....

Right now, popup windows obscure each other. Make it so that the selected popup window is brought to the front of the GUI arrangement for viewing.

Add tests to check for the reason #730 was necessary, Check that the lengths of the waveforms sent to the NI DAQ board for two different channels at two different...

Add `read()` functionality to TIFF data sources

1

Make it possible to read TIFF data sources in and slice them as xycztps array.

I don't think we actually average frames coming off the camera anywhere.

Write fails when we hit maximum disk space

4

I know we check for disk space before starting an acquisition (#507), but it seems this is insufficient. An example of where this approach fails is copying data to the...