Zac Shi

Mutect2 output vcf FORMAT not accepted

5

When fed with vcf files from GATK4(version gatk-4.0.1.2) Mutect2, I got error message: 2018-04-26 12:37:19 - pcgr-validate-input - ERROR - According to the VCF specification, the VCF file (/workdir/input_vcf/AE188.mutect2.vcf.gz) is...

Mappability map for the latest human reference genome T2T-CHM13

5

The latest human reference genome T2T-CHM13([https://github.com/marbl/CHM13])has been around for a while, could you please provide a mappability map for that version of human reference genome? This is more like feature...