zachary henning

[Bug] OSError: AF_UNIX path too long

1

**Describe the bug:** Hello, I've ran into this error during the first iteration of binning in the prokaryotic_binning module. Essentially, it creates bins in the first iteration but this checkM2...

### Description of feature Prokka's tbl2asn function takes a significant amount of time to complete. It would be ideal to have the option to skip prokka annotations of these unbinned...

DRAM2 fails during large batch due to ARG_MAX

1

Hello, I have currently ran into an issue when running ~1200 genomes through DRAM2. Specifically the issue is when trying to run the combine_annotations.py, when running that job it errors...

ezAAI is writing files it can't delete (-tmp not working)

1

Hello, so `ezAAI calculate` writes files that it can't delete. I use the `-tmp` command give my self permissions, etc. but when I run the command I always get this....