z-spider

Results 4 comments of z-spider

need `-B` or `--bam`,then we will encounter this problem: #57 but, -B option is not what was causing the issue. preseq try to merge the paired-end reads, but there are...

saw 8.0 has new output directory structure ![1723010972577](https://github.com/user-attachments/assets/c3421b26-391f-4a24-b956-a166890bccca) from this manual: https://en.stomics.tech/service/new-saw-operation-manual.html

Stereo-seq FF V1.3 or Stereo-seq FFPE can only be analyzed with version8, so I recommend version8. I like to use shape, but it's worth noting the `x` and `y` columns...

> No, `stereopy` is not a good idea. We have used `stereopy` before. It's hard to install and hard to use. Just ignore it. I agree,stereopy now only support python=3.8