yzhang-github-pub
yzhang-github-pub
First, I tested enc_dec_copy.py, and it works. Second, I used pad masks for both source and target, and masks are made with this function: def make_mask(input, pad_value): # input is...
I will re-run the training without target mask to see if results are any different. I will share training loss then. Regarding sharing experiment, what do you want me to...
Thanks a lot!
@lucidrains Not exactly. Using language translation as an example. The model generates one best target sentence, either greedily or by beam search. What I ask is to generate top k...
@rubenalv after PPI prediction, how do you call interface, i.e., criteria including PPI probability cutoff, length of a stretch of qualified residues which meet probability cutoff, etc.?
@rubenalv Thank you for your explanation. The names of python scripts and jupyter notebooks in this git repo suggest they are for interface calling/clustering. But the source code is not...
@malton-ont Thanks for taking care of this!
I have the same question. I setup the environment with conda, installed dllogger and openfold. Then with conda activated, I typed 'esm-fold' in command line , but got 'command not...
Thanks @dacolombo. I bypassed the issue by running scripts/fold.py inside the cloned repo.