Yuec

key error: K01566 when using DRAM-v.py annotate

1

Hi, Thank you so much for providing this powerful tool,I got an error when using DRAM-v.py annotate. My command line is : DRAM.py annotate -i '/ibex/project/c2252/Chimneys/trim/Metabat/bins/2_bins_dir/2_good_bins/*.fa' -o /ibex/project/c2252/Chimneys/trim/DRAM/2_bis_DRAM_annotation --min_contig_size 1000...

failed to extract correct .bed file from gff file which is generated from prokka : python -m jcvi.formats.gff bed

3

Dear developer, Thank you so much for developing this amazing tool, while I have succeed in running the example (grape and peach), I have issues in running my own samples,...

TypeError: add_variable() got an unexpected keyword argument 'update'

7

Dear developer, I am trying to run smenata with this command: smetana --flavor fbc2 -o test3 -v -d --molweight --solver cplex --zeros genome2.xml genome1.xml but i received this error: TypeError:...