yutoubb

I ran a series of imputation jobs with different number of samples (from 1 to 42, we are planning to do more later) in combination with other experiment parameters, and...

I tried to compile under a Ubuntu 14.04 vm on a cloud server, and copy the executable to our cluster, and use glibc 2.17 to run it. For this v1.0.1...

I tried to send you an email but got an unknown error. Here is the stderr and stdout: stderr ``` /opt/gridengine/default/spool/compute-f14-16/job_scripts/7827469: line 1: 194704 Aborted (core dumped) /share/app/glibc-2.17/lib/ld-2.17.so --library-path /share/app/glibc-2.17/lib:/share/app/gcc-5.2.0/lib64:/share/app/gcc-5.2.0/lib:/share/app/libz/zlib-1.2.11/:/share/app/cmake-3.3.2/lib:/opt/gridengine/lib/lx-amd64:/opt/openmpi/lib:/opt/python/lib...

Minimac3 dose not sopport hg19 reference? should I change the chromosome names in vcf and refpanel from chr21 to 21 ? ``` Checking variant information ... Error !!! Target VCF...

Got the results from Minimac3. Thank you very much!

I've been struggling to install Minimac4 for a couple of days. After installed python virtualenv for cget and changed cmake and other shared libs, I got above error in make...

Thank you for your reply! The OS should be a customized version of Centos 6. Our system default python is 2.6, so I used a python 2.7 which installed by...

$ cget install -f ./requirements.txt Downloading https://github.com/statgen/libStatGen/archive/HEAD.tar.gz [######################################################################] 100% Extracting archive /some_path/Minimac4/cget/cget/build/tmp-62ee1d7ab3794245974f551b30cb3092/HEAD.tar.gz ... -- The C compiler identification is GNU 4.4.7 -- The CXX compiler identification is GNU 4.4.7 --...

Actually I did run each steps separately before, and just repeated the process again and still get error at the last make step.

I removed everthing and tried again, but still get the same error. I don't understand why in the log 'The C/CXX compiler identification is GNU 4.4.7 but anctually I set...