YUN
YUN
HI! Thanks for your excellent work! When I use the web https://django.dreg.scigap.org ,I upload my data but I cant find my results. I got something in my Storage, while I...
Dear Author: I run the example set.seed(125) out = remap(demoC,title = "REmap",subtitle = "theme:Dark") plot(out) But I got something wrong: Error in as.double(y) : cannot coerce type 'S4' to vector...
Hi, I want to know is it possibe to plot figures for paired samples like this in gghalves? I tried to add by geom_line() function, but it seems a little...
## Description Hi, When I ran the code ``` img=sq.im.ImageContainer(adata_st.uns['spatial']['T91']["images"]['hires'],library_id='T91') viewer = img.interactive(adata_st) ``` I only get a black GUI, I'm not sure is it correlated with my WSL2-Ubuntu20.04? Could...
Hi, I use the easy mode to my data with code below: ``` #Set seed r_seed=t_seed=n_seed=100 #Search for suitable resolution #Set seed random.seed(r_seed) torch.manual_seed(t_seed) np.random.seed(n_seed) #Run SpaGCN adata.obs["pred"]= spg.detect_spatial_domains_ez_mode(adata, img,...
Hi, I wonder how to choose a better "batch size" for scRNA and ST data? Is it related to the number of "orig.ident"? Besides, it seems that in the tutoriol...
Hi, I use `python -c "import stsc; print(stsc.__version__)"` and get the version 0.3.1.However, When i use the code `stereoscope test`, the Error is  `(stereoscope) D:\stereoscope\stereoscope>python -c "import stsc; print(stsc.__version__)"...
Hi there, When I run the code `stereoscope run --sc_cnt ../data/curated/*cnt*.tsv --sc_labels ../data/curated/*mta*.tsv -sce 75000 -o hippo_1 -n 5000 --st_cnt ../data/curated/st-hippo*tsv -ste 75000 --gpu -stb 100 -scb 100` I got...
Hi, I want to use CellChat as the tutorial described in 'Brief tutorial for CellChat analysis of multiple spatially resolved transcriptomic datasets'. I got the result when set layout =...