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                                            yuhongning

Abra error

Hi, I am trying this tool to do realignment in a few regions, but got following error: java.lang.NegativeArraySizeException at java.lang.AbstractStringBuilder.(AbstractStringBuilder.java:64) at java.lang.StringBuffer.(StringBuffer.java:108) at abra.CompareToReference2.getSequence(CompareToReference2.java:400) at abra.KmerSizeEvaluator.getBases(KmerSizeEvaluator.java:44) at abra.KmerSizeEvaluator.identifyMinKmer(KmerSizeEvaluator.java:98) at abra.NativeAssembler.assembleContigs(NativeAssembler.java:273)...