yongrenr

Hello! I'm interested in your work and I'm trying to reproduce the results on the data you released, but I'm having some problems. "The average precision was calculated based on...

> Hi! > > Both the balanced accuracy calculation ([sklearn.metrics](https://scikit-learn.org/stable/modules/classes.html#module-sklearn.metrics).balanced_accuracy_score) and average precision calculation ([sklearn.metrics](https://scikit-learn.org/stable/modules/classes.html#module-sklearn.metrics).precision_score) is used for all ranks. Thank you very much for your prompt reply!!!! I'm curious...

> In this table it is Average Precision (AveP), but we also have Precision-Recall-plots, ROC-curves and balanced accuracy. So comprehensive!! I have one more small question.On the Closely and Distantly...

> Hi, i am using following command and getting error for core/memory i guess > > kraken2 --threads 10 --db /media/scebmeta/raw_backup/kraken2_full_db/kraken2_db KN106_scaffolds.fasta --report KN106_kraken_report.txt --output KN106_kraken_output.tsv Loading database information... done....

> Hi, the issue seems to be due to parallel, not DeepMicrobes. Please try installing parallel first (not use parallel provided here) and make sure that installation is fine. Thank...

> Hi, I'm not sure how to parse the seq_id in your file. This issue is not related to DeepMicrobes codes. The index error showed that the code failed to...

> Hi, > > 1. Sorry, not sure what do you mean by "in batches"; > 2. I would recommend that you format your fastq headers to the same as...