Yojet
Yojet
> Hi spietrzak. All you have to do is define an array of length n (n = # cells) where each value denotes the cluster a cell is in. I...
Sorry for the delay. There were duplicates, but they were made unique.
Hi Sam, Sorry for not posting the full code as my rstudio crashed and nothing was saved. Now I’m stuck with ArchR issues but will revert with the complete update....
``` > DLK1 1) > HES5 1) > cells 1 and only the first element will be used > > # Plot > Cell_Highlight_Plot(seurat_object = npcs, cells_highlight = cells) Error...
(Okay, first off I got confused with the usage of the word “phenotype”. I think it’s misleading since you mean to say genotype/conditions and so it should be corrected.) I...
> Hi. In my case, got the same error and I tried the pip install inside a conda environment as suggested by @Richardosgrapevine , but it did proceed to update...
This didn't work for me. Can someone please provide some other workaround?
> 1. tutorial reads: > > > ``` > from scenicplus.scenicplus_class import create_SCENICPLUS_object > import numpy as np > scplus_obj = create_SCENICPLUS_object( > GEX_anndata = adata.raw.to_adata(), > cisTopic_obj = cistopic_obj,...
Hi, any idea how i can import modules like pycistopic.diff_features while running it as a job? pycistopic module gets imported when i submit the job on SGE but not the...
Hi, I have a doubt regarding the code above: I’m trying to map my query which doesn’t have the same obs as the reference, so how can I go about...