Yossi Farjoun
Yossi Farjoun
… runtime) In the cram code the code throws an IllegalArgumentException when asked about the bases when a reference was not provided. This PR changes it to a CRAMException to...
… runtime) (sorry again about the push to master) ### Description Please explain the changes you made here. Explain the **motivation** for making this change. What existing problem does the...
… examples to more accurately show where the jar will be after compiling.
(Sorry about the premature push into master earlier) There seems to be a lack of testing of SamLocusAndReferenceIterator on cram and bam files, which lead one of our contributors to...
The `accumulator` field is used with the following access patterns: - .remove(0) - .add(element) - .add(0) - .sublist(0,i).clear() - .get(0) - .get(i) as one can see, except for the last...
The VCF parser is currently unable to parse VCFs with complex rearragnements and this is showing up as Picard issues: https://github.com/broadinstitute/picard/issues/1406 Need to prioritize and fix.
I propose to change the list of maintainers of this repository, In particular, I would like to suggest that since @jacarey is no longer an active participant, (last action: May...
When importing a wdl (B) that has a Struct definition into another wdl (A), one can use and reference that struct in A without needing to note the namespace of...
I'm trying to work with half-infinite date intervals i.e. something of the sort of `interval(today(),Inf)`...but that doesn't work. Instead I've been using something like `interval(today(),today()+Inf)` which does work, however, when...