yeroslaviz

But when running the command with the new data I still get an error ``` wot optimal_transport --matrix data/ExprMatrix.h5ad --cell_days data/cell_days.txt --out tmaps1.0.2/tmaps1.0.2 ``` the files are as followed **data/ExprMatrix.h5ad**...

Hi, I was wondering if there is any intentions of trying to fix the problems in the new version, or if you need more information to do so thanks, Assa

where can I find the older example data gain to re-run the analysis of the example data set?

thanks, but where? I have the Methods S1 part, but I can't find, where the gene scores calculations is explained.

This looks great and i will definitely test it. But on the fly i have seen, that in the examples you have on the web site, the cell-sets are still...

wot v. 1.0.0 is not reachable. when doing either ``` git clone https://github.com/broadinstitute/wot.git cd wot pip install -e . ``` or when tryin to install it via `pip install wot`...

I would still like to know if you can help with this issue. I have a calculated the gene-score using the `gene_set_scores` command and got for each of my 18...

This is good to know, thanks. I thought it calculates it separately for each file. Now I understand why I get for each cluster a separate file :-) But I...

Thanks for the answer. But I would really like to know, is why you chose 8000 in `cluster2` and not sure about `cluster1`. `cluster1` can also be seen (in a...

The x-axis now looks also similar to the table above. I have ran the gene-score calculations with all three methods `mean_z_score`, `mean_rank`and `mean`. In the third option the values are...