Anurag Priyam

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Sorry I wasn't clear - I was talking about the arrows that occur as part of the grouping lines. We are using mRNA features with exons and CDS and I...

Can you check if adding “-j number_of_cpus” works?

Yeah, that's correct - I tested both the day I merged. The reason to ask you was that I thought you may want to anyway as you added the functionality

The status code 2 is most likely coming from the `tar` command which means fatal error. Maybe you ran out of space in the directory you are downloading the BLAST...

Summarising things from #408 here and other stuff I have learnt in the meanwhile. 1. Zsh completion doesn't complete 1. subtools of tools (will especially become important with #162) 2....

@gordon I will sure give it a shot as soon as I can find some time. I guess looking at how `-retainds` works will be a good start. At the...

@sjackman Sorry, I pass. I maintain that this issue or at least #605 is very relevant to me, but I'm not able to make time.

@satta I have wondered too why `-matchdescstart` is not the default behaviour. @sjackman See if `-retainids` option works for you.

I opened an issue for adding coordinates to defline (#597) as I'm also interested in the feature.

I feel the fate of this issue is independent of #162. I think it makes sense to show one line description of tools even if we have only 9 top-level...