ydanylko
ydanylko
Currently having the same issue after suddenly being asked to run export funannotate_db again
fix seems to be to specify a minlen, I chose 1 and mine worked, hope this helps
> Just downgrade biopython
I decided to move on to funannotate annotate but this resulted in the same issue. I have uploaded the contents of my predict_results folder at the link below (compressed folder...
The issue was with funannotate predict and biopython, it is discussed in more detail here: https://github.com/nextgenusfs/funannotate/issues/1000
I reinstalled completely, downgraded biopython as is posted there and indeed some aspects of funannotate like eggnog still fail. I would run eggnog and interproscan on the web (galaxy and...
Also, make sure you install with conda as a whole new environment, my environment was created within another one, adding to the issue
I can't give a full list right now, but I was using biopython 1.79, it would not work otherwise. Do not attempt to install eggnog as it will downgrade to...