Yazhini
Yazhini
Hi, When I wanted to run `bwa mem` with all alignment options `-a` and parallelization using `-t`, I find that the output only contains the best alignments. Even if I...
Dear developers, I would like to know if there is any possibility of using `hnsw` results for finding the shortest path between nodes. Your response is much appreciated. Thank you....
Hello, I want to get the nearest neighbours for each point in the dataset. I notice from the results of `knn_query` that the neighbour list for some points does not...
Hello, I wanted to create a vector of read ids with some statistics on each alignment. For this, I would like to pre-allocate the space for the vector. Is there...
Hello, I get the following error when try to download the diamond database using this command `checkm2 database --download --path /path_to_checkm2/checkm2/` Traceback (most recent call last): File "./checkm2", line 282,...
Hello, It is a great work. My test run (on the STL10 dataset) ran completely but I see no output saved or printed about final clusters. I used the same...
Hi, I am using `SemiBin2 single_easy_bin` command with pretrained model and 10 samples. I get an error that provided pretained model (global or ocean) only used in single-sample binning!. Is...
Hi, I couldn't install due to following error. pip install pdc-dp-means ERROR: Could not find a version that satisfies the requirement pdc-dp-means (from versions: none) ERROR: No matching distribution found...
Hello, Thank you developing this tool. I have a question related to the following point mentioned in the readme. _The abundance is the number of bases mapped to a contig,...
Hi, Semibin2 shows problem with producing bins `SemiBin[86060] INFO Number of bins prior to reclustering: 0`. Due to this, the following error occurs with Sequence file `/semibin_tmp/tmpcyhmrovl/orfs.faa` is empty or...