Tianran YAO
Tianran YAO
With tryCatch one can easily capture errors or warnings ``` exception = tryCatch( { # something you want to do }, error = function(e) e, warning = function(w) w )...
I think the less bins you use the greater txnE you should set. Because larger bins leads to fewer CNA. Greater txnE value gives the model more "stable" copy number...
Are you sure to use such small bins and how many reads for each bin ?
@ryanlayer Do you mean that to be more accurate one should merge two vcf files first by bcftools and feed SVTyper two bam files to get the genotype, while to...
Perhaps you need an extra channel: anaconda ``` channels: - defaults - bioconda - anaconda - conda-forge - r ``` This works for me. Besides Snippy needs so many dependencies...
Conda version has a bug that it needs an extra library "libgsl" which is not correctly installed. A work around is to replace "/envs/snippy/bin/bcftools" with a static binary version of...