Yannik Schaelte

rpy2 prevents shutdown via Ctrl+C

12

**Describe the issue or bug** When importing `import rpy2.robjects` in a flask app (https://github.com/pallets/flask), I can no longer close the app by ctrl+c. I checked that it is this line...

[WIP] Release 0.12.6

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* Add JOSS paper of version 0.12.5 * Update Julia reference DiffEqJump -> JumpProcesses (name change)

Implement a set of common ABC test and application problems with common API (prior, ground truth, data, model, ...) - [ ] simple Gaussian of dim n with estimated mean...

**Feature description** From the corresponding paper Simola et al. 2021 https://projecteuclid.org/journals/bayesian-analysis/volume-16/issue-2/Adaptive-Approximate-Bayesian-Computation-Tolerance-Selection/10.1214/20-BA1211.full **Motivation/Application** Adaptive quantile selection, with promising results reported in the paper. **Difficulty** Not too difficult, just may require some...

Provide an accessible overview page of highlight algorithms implemented in pyABC (as well as corresponding publications for further details).

Use local random state

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It is cleaner to manually define a random state, pass it to pyabc and then also to all workers (appropriately reinitialized). This would allow increasing the degree of reproducibility (there...

**Feature description** Implement the ability to use low-fidelity models with separate acceptance criterion, to determine whether to simulate the costly high-fidelity model via early rejection/acceptance, and thus overall reduce the...

**Feature description** It is currently insufficiently specified what is stored. In particular, the stored sample should be exclusive parameter or data transformations, so as to enable an easy change of...

**Feature description** In most cases, the set of summary statistics and their dimensions should coincide between all simulations and the observed data. Thus, add a check somewhere (Model class?) for...

**Feature description** For HPC infrastructure, we use integrated bash based scripts that handle the whole node allocation, server starting and script execution. For convenience, we should provide and document those.