yangkl96

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Hi Patrick, I'll take a look now too and see if MSBooster is causing anything weird

Hi Patrick, Could you share with me just one of your uncalibrated mgf files? JHU_AD_PLASMA_PERCA_PRO_DDA_81_S4-G5_1_11706 should be good

No worries. I am running this code within IntelliJ IDEA [triton_error.txt](https://github.com/triton-inference-server/server/files/13651332/triton_error.txt) I have a pom.xml from here: https://github.com/triton-inference-server/client/blob/main/src/java/pom.xml

Hi Ben, This error is caused by peptides with charges higher than 6 not being properly filtered out during Prosit's NCE calibration. This error is fixed in the newest MSBooster...

My apologies, I forgot the newest MSBooster is only compatible with the newest FragPipe prerelease. I've added the new FragPipe to the Dropbox folder above. Just copy `MSBooster-1.2.52.jar` to the...

Only AlphaPeptDeep will be able to support the modifications such as C-terminal PTMs and carbamidomethylation of noncysteine amino acids, since it attempts to predict all PTMs in UniMod. I have...

Here is the request link: https://www.dropbox.com/request/c9sgqiJOUG1EqZb0AYx0 Thanks for the suggestion, I can add a warning or documentation.

I am making some final changes and should have a new version for you by tomorrow

Hi Ben, Thanks for your patience. Can you try out the newest [version 1.2.56 here](https://www.dropbox.com/home/Kevin%20Yang/msboosters/BenSamy2020_msbooster1.2.52)?