Yi Zhou

请问有可能支持显示热评回复吗？具体实现上比如拉取前几页的回复然后选取点赞大于特定阈值的回帖降序排列？ 谢谢。

When we want to number multiple sequences, `ANARCI` [takes an `ncpu` argument](https://github.com/oxpig/ANARCI/blob/c2fd0f75ee3aa4cff842548d3d75b64815a8f663/lib/python/anarci/anarci.py#L857-L882) that allows running `hmmer` in parallel. [Here](https://github.com/prihoda/AbNumber/blob/b8d8d655eca6440d4b1bd8559f4a49ccfa408cf7/abnumber/common.py#L23-L31) it seems the `Chain` class can only take one sequence and...

Cutoff evaluated for bonds

6

I'm getting different energy estimates in `forces.compute` vs. `gmx energy`, i.e. the `Bond` term from Gromacs and the `bonds` term from running `Epot = forces.compute(system.pos, system.box, system.forces, returnDetails=True)`differ by a...

PyTorch and pandas syntax fixes and expression matrix performance improvement

1

Hi @changwn, I've been trying to use `scFEA` on some of my datasets, and updated the main module `src/scFEA.py` to get it working on my end. Here's a list of...

Running calculations in parallel

2

Is it possible to replace the `sapply` and `apply`'s in the code with `BiocParallel::bplapply`? For example `mclusterSim` becomes really slow when the number of clusters / the size of the...

Shortcode: figure doesn't work for image URLs

1

The `figure` shortcode seems to only work for relative links now.

Add ReadOptions implementation

10

This is to address #125, where we pass in `ReadOptions` to the `open()` functions instead of just `StrictnessLevel` for future extensibility. - [x] PDB parser with `ReadOptions` - [x] mmCIF...

"Run All" button executes cells in random order

4

### Applies To - [X] Notebooks (.ipynb files) - [ ] Interactive Window and\/or Cell Scripts (.py files with \#%% markers) ### What happened? # Steps taken 1. Create new...

Consistency between read_csv and read_excel for duplicated column names

1

### Description When reading a CSV file with duplicated column names, the later columns get renamed with suffixes like `_duplicated_0`, `_duplicated_1`, etc. For Excel files, the columns get suffixes of...