Rebecca comments

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                                            Rebecca

Write 0 partitions to `input.clusters.txt`

Hi! I will also encounter the same situation, not output any partitions. I don't understand why this is happening. Looking forward to your reply. Here is my run command： `icup...

How to get the unique matching path for each read

Thank you for your reply, I will try the method you gave me. I would like to ask if I can determine the best match based on the maximum value...

How to get the unique matching path for each read

Thank you !

How to get the unique matching path for each read

Hi ! Thank you for your previous explanation. I still have a problem. In order to subsequently analyze the abundance information of different nodes, I can only use json file...

How to infer different species-level abundances based on strain-level abundances

Thank you!

How to infer different species-level abundances based on strain-level abundances

Can the strain information corresponding to different reads be obtained from the output results of Starin Scan?

How to infer different species-level abundances based on strain-level abundances

thank you very much!

[BUG]For HiC data, the size of SAM files outputted using Chromap is much smaller compared to those from BWA-MEM

Thank you very much for your reply！ I checked the MAPQ situation of the SAM file, and there are indeed a large number of MAPQ=0 situations. I hope chromap's SAM...

[BUG]For HiC data, the size of SAM files outputted using Chromap is much smaller compared to those from BWA-MEM

Thank you very much for your help.

Where to get detailed description of GFAse's computational methods？

Thank you very much for your reply! I saw in your article that "To phase the graph, GFAse first identifies diploid, haplotypic bubbles. Two methods are available in GFAse: assembler...