xizhihui

Hi, maybe it's too late, but hope it will help others. 1. we have to download the zip of velocyto.R and unzip it. 2. download the boost and build it....

https://github.com/TimoLassmann/kalign/blob/d494b4ce715cf0907db1bc57d0d5ddaf6f382b10/src/run_kalign.c#L208 so use "-n number".

Hi, After you finished running the IKAP, you could get the PC_K.pdf in which B indicated the best PC (eg. 18) and Cluster (eg. 12). In the meta.data of Seurat...

Hi, I think you can have a look at the README and the source code of function "IKAP". It seems that pc.range is used to get the final pcs computed...

if you have read the source code in IKAP, you would find these [lines](https://github.com/NHLBI-BCB/IKAP/blob/532b3a2e331179212871b5de162754ecd7e9e614/R/IKAP.R#L49-L74), it shows that when "pcs" is provided, pc.range is ignored and resolution is used as the...

> if you have read the source code in IKAP, you would find these [lines](https://github.com/NHLBI-BCB/IKAP/blob/532b3a2e331179212871b5de162754ecd7e9e614/R/IKAP.R#L49-L74), it shows that when "pcs" is provided, pc.range is ignored and resolution is used as...

Hi @denvercal1234GitHub in the lines from [BottomUpMerge](https://github.com/NHLBI-BCB/IKAP/blob/532b3a2e331179212871b5de162754ecd7e9e614/Seurat3_code/IKAP_Seurat3.R#L70-L74), you can add a message line to print the informations like: ```R # after FindClusters # PC, resolution, K message(npc, ",", clust.r, ",...