xingma
xingma
I think the command below will solve this problem: ``` perl -alne '$,="\t";print (@F[1..@F-1], 0, $F[0])' hg38_kg.txt | genePredToGtf file stdin hg38_kg.gtf ``` The hg38_kg.gtf file is the needed file...
Hi, this problem is caused by few transcript annotations with strange start codon and stop codon position. I have updated CLEAR to 1.0.1 to solve this problem. Thanks.
To obtain the desired annotation file format, which is slightly different from the direct output of "gtfToGenePred," use the following command: `paste