xinghua1001
xinghua1001
I also got similar problem. Some of the hic file failed to be built and got errors like below. Waiting for some help ...Dumping 25000 resolution matrix HiC file version:...
Hi Dr. Zhang, I think there is an error in the ALLHiC_pip.sh script: ### filter bam samtools view -bq $threads sample.bwa_mem.bam |samtools view -bt seq.HiCcorrected.fasta.fai > sample.unique.bam the $threads may...
Can this software be used for other organisms. How to prepare the reference files?
Thanks for reply! In the run_numbat() function, the genome parameter is limited to (hg38, hg19, or mm10). Can we set it to Null?
Hi Dr. Fukushima, Is it possible that although OmegaC is significant, csubst site can not detect convergent sites. In my understanding, OmegaC is calculated at the gene level. Even if...
Hi Kenji, thank you for developing csubst. Can you show us how to plot this figure by csubst?
Thank you so much! This tool is really useful and super cool. I believe it will be very popular and highly influential in the future.