Xianfeng Li
Xianfeng Li
In the QC part, you provide a script "QC.sh" to output QC of BS-seq data. But you did not describe the format of setup_file and its containing files. Could you...
### Description of the bug Dear sarek developers, I wonder implement sarek to my WGS project. But the network is bad. So, how can I build this pipeline step by...
I use Integration_SCP with SCT and Harmony to normalize and remove betch effect as follow commond: sce
I am new in scRNA-seq analysis. I wonder how to set the ribo_mito_ratio_range. You set it as "c(1,Inf)". Could you provide more detail information why or how to select the...
Hello, I caught error as follows: ####################### Error in .local(GdObject, ...) : Too many stacks to draw. Either increase the device size or limit the drawing to a smaller region....
Hello, I try to perform CNV detection with infercnvpy with rapids_singlecell integrated 1 M cells. It still work slow. Any suggestion to speed up the process of CNV detection? Could...
怎样设置go或kegg的富集框大小
Hello, very powerful method to prediction CCC from scRNA-seq. When I try to use the "li.mt.rank_aggregate", the CellChat run slowly. Would you speed up the process based on GPU? Thanks!
I use scMerge2 to integrate about 150K cells. Now, it costed about 5 hours and still run the "Running RUV" step with 120 CPU. I wonder how to accelarate the...