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Questions about filtering process of zumi pipline when using it to analyze Smartseq3xpress raw sequence data

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Hi I have got the raw sequencing data of 293T cell(MGI, paired end 150bp), and this data has been demultiplexed. So I followed steps "https://github.com/sdparekh/zUMIs/wiki/Starting-from-demultiplexed-fastq-files" to obtain input files. When...