Jiayi Wu Cox

icon indicating a website link https://jiayiwu.me icon indicating an email [email protected]

icon company Novartis Institutes of Biomedical Research icon location Boston, MA icon location A versatile ML/data/compbio scientist who is experimenting using machine learning and statistical genetics for diease outcome prediction.

Results 5 issues of Jiayi Wu Cox

fixed user defined grid_file in FDR calculation

fiexed "ufunc 'bitwise_and' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe'' " error caused...

Amino Acid test with continuous outcome

2 comment

I'm trying to use HIBAG with continuous outcome to do allelic test and amino acid test, my allelic test ran really fast and has no issue. However, when running the...

Unable to install pymesh due to CMAKE error

Hello, below is the log for it: could someone give me some suggestions? ``` CMake Error at /da/NBC/ds/rt_env/miniconda3/envs/masif_seed/lib/python3.6/site-packages/cmake/data/share/cmake-3.27/Modules/CMakeDetermineCXXCompiler.cmake:48 (message): Could not find compiler set in environment variable CXX: /da/NBC/ds/rt_env/miniconda3/envs/ci/bin/x86_64-conda_cos6-linux-gnu-g++. Call...

Designed CDR clashed with antigen

1 comment

Dear author, [5CIL_0023_CDRH3.pdb.zip](https://github.com/luost26/diffab/files/12675852/5CIL_0023_CDRH3.pdb.zip) I did single cdr loop CDRH3 structure-sequence co-design with input as a pair of Ab-Ag complex and using this exact config file https://github.com/luost26/diffab/blob/main/configs/test/codesign_single.yml. Interestingly, one of the...

masif_search weight file for scoring aligned patches is corrupted.

2 comment

Dear author, I'm currently using masif_search for PPI scoring. I need to run `second_stage_alignment_nn.py` to align and rescoring different poses. This python script will load a pre-trained neural network called...