William Scott

adding pathways| Error: No model reactions found and Error: Error in !opt$sbml.no.output : invalid argument type

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Hi, I wonder how I can troubleshoot the following errors when adding certain pathways to my genome-scale models of interest. I am trying to add chlorobenzene degradation pathways to a...

# Description of the issue BiGG model database found in the BiGG Models API does not contain BiGG identifiers. This creates problems for CarveMe, for instance, to create GEMs that...

Issue: No Rendered Output When Following MICOM Documentation for Constraint-Based Modeling

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#### Problem description Hi I have been following the published documentation on the MICOM webpage to create a proper workflow and model manifest for performing analysis and obtaining results. However,...

itle: Difficulty Performing SteadyCom Analysis on Genome-Scale Community Model Created with CarveMe

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Hello @cdanielmachado, other developers and all in the community, I am interested in performing analysis on my genome-scale community model, which I created using CarveMe. Specifically, I want to utilize...

Issues with Community Modeling and SteadyCom Function in MEWpy

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Hello @vvvieira, @jorgemlferreira and the MEWpy team, First, I'd like to express my appreciation for the tool your group has developed for in-silico metabolic modeling and engineering. It appears to...