Shuai Wang

icon indicating a website link https://wshuai294.github.io

icon company University of California, Berkeley icon location USA icon location Develop new methods to decipher the complex microbiome and the human genome.

Results 6 issues of Shuai Wang

Why the bacteriophages are not included.

Thanks for the fantastic MGE database. I have a little question. Why are the bacteriophages not included?

Why Ipdsummary requires subreads instead of HiFi reads?

Hi Developers, Thanks for the amazing tool. I would like to ask why Ipdsummary requires subreads instead of HiFi reads. Will subreads provide more information? Also, subreads seem to be...

5mC motif detection

2 comment

Thanks for developing this wonderful tool. I want to detect the 5mC motifs based on the results of pb-CpG-tools. Is there a convenient way to transform the output and pass...

ERROR: BindingKit, SequencingKit, and ChangeListID are mandatory but unavailable

Hi, Thanks for these tools. When I run `bax2bam`, it report this bug. Could you help me with this? Here is the cmd and log: ``` (bax2bam_env) shuai-wang@Mac rebase %...

How to identify contig-level methylation using Jasmine

Hi, Thanks for the amazing tools. Jasmine can provide read-level methylation profile. I am wondering if we can get a contig-level methylation profile based on Jasmine's output? If so, is...

Python integer 3367457666 out of bounds for int32

7 comment

Hi, Thanks for the wonderful tool. It seems some read group id is so large that is higher than the max value of int32. Could you please change it to...