wresch
wresch
We patch our htslib locally to force path_style URLs via a 'url_mode' key in .s3cfg so that we can access a local cleversafe store. It would be nice if this...
i can reproduce this with 7.7.0 using named (existing) environment but *not* with a .yml file
Thanks @wlandau - I can confirm the behavior and that downgrading to `future` 1.21.0 fixes this in our environment.
That works. Sorry about not realizing one could specify `:ro` and opening an issue. Thanks alot.
It would be great if the cluster assignments for Uniprot50 and ESMAtlas30 could be made available!
yes our internal show-cluster-util handles it. but it does so with an older pyslurm. trying to test with a newer version now, but having some trouble getting pyslurm to build.
created pull request #5
@wccropper - did you edit the path to pyslurm at https://github.com/giovtorres/slurmtools/blob/0d27225ac297ff839000502a76d46f5fc706a9cb/show-cluster-util/show-cluster-util#L32 it's somewhat awkwardly included in the script rather than a config file...
I have the same problem with the plasmid database with kraken 2.1.1. To debug, here is the output from the wget run by `download_genomic_library.sh`: ``` 4► wget --no-remove-listing --spider ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plasmid/...
I didn't really explain my workaround very well, so here is a patch: ``` --- download_genomic_library.sh.orig 2021-03-04 07:47:23.979836000 -0500 +++ download_genomic_library.sh 2021-02-24 22:06:31.238936000 -0500 @@ -62,7 +62,12 @@ rm -f...