woodoo46
woodoo46
Hi there, Just a quick question, is there an extra script annotating each SV's type, such as insertion/deletion etc.? Or there is an option in the program? Thanks! George
KeyError
Hi, there, I ran DRAMv, and got the following error UserWarning: No descriptions were found for your id's. Does this YP_656630.1 look like an id from viral_description I am not...
Hi there, I am trying to run do database preparation as following: DRAM-setup.py prepare_databases --output_dir ${outdir} --skip_uniref But I had the following error: subprocess.CalledProcessError: Command '['mmseqs', 'msa2profile', 'DRAM_data2/database_files/pfam.mmsmsa', 'DRAM_data2/database_files/pfam.mmspro', '--match-mode',...
Hi Manta developers, Does Manta always print out SR support information for BND record? Thanks. George
Hi, When I tried to use eval error, I had problem: RROR in cling::CIFactory::createCI(): cannot extract standard library include paths! Invoking: echo | LC_ALL=C g++ -pipe -m64 -Wall -W -Woverloaded-virtual...
Hi Vezzi, The executable file is named FRC? not FRCbam? Thanks.
Hi there, For testing, I made two vcf files, one file has record like this chr1 108190704 DEL00000334 T \ . PASS IMPRECISE;SVTYPE=DEL;SVLEN=-3926;SVMETHOD=EMBL.DELLYv0.8.1;CHR2=chr1;END=108194630 ... and another file has only one...
Hi there, We are using hifi-asm to assemble human genome sequenced on Pacbio Revio machine, the coverage of the sample is roughly 30X (may be lower though), we found that...
Hi, Just want to know if we can polish certain region? For example, we have mapped reads on whole human genome, however, we only want to polish certain regions say...
Hi, there, We recently upgraded to STRique 0.4.2; but when we tried to run the program, we had the following weird error: 03.01.2022 14:00:58 [PID 46032] [WARNING] Factory: Unexpected error...