wolfylair

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Error: The focal species is not present in UniProt

Same issue here. I suspect Uniprot is changing its API again. Is there any way to apply local database so we may get around of the issue?

Error: The focal species is not present in UniProt

Thanks! Is there any chance to resume the normal use of PhylostratR in this situation? It'll be great if there is another port for the package to link with Uniprot....

Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) : Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta In addition: Warning message: In system2("makeblastdb", stderr = TRUE, stdout = TRUE, args = c("-dbtype", : running command '"makeblastdb" -dbtype prot -in Araport11_genes.201606.pep.fasta -out blastdb/Araport11_genes.201606.pep.fasta' had status 1

Did you check the path for every entry? Please make sure your file 'Araport11_genes.201606.pep.fasta' and the folder 'blastdb' is both in your working directory. What the code does is literally...