Kokulapalan (Gokul) Wimalanathan

When I run the above command I get an error `catalog-v001.xml (No such file or directory)` and I was wondering where to get the catalog file specific for gene ontology?

Thank you. I could get the command working, but wasn't sure whether not having a catalog file would change the results.

Thanks @balhoff. I will ignore the warning for now. I'm sorry, I had pasted the wrong command. I used `elk` reasoner first owltools go-plus.owl --reasoner elk --make-species-subset -t NCBITaxon:33090 -o...

I am currently checking it. I'll get back to you once I have results.

I ran the above command and output to two different formats obo and owl. **obo** owltools go-plus.owl --reasoner hermit --make-species-subset -t NCBITaxon:33090 -o -f obo plant.obo > obo.out.txt 2>&1 [obo.out.txt](https://github.com/owlcollab/owltools/files/3179417/obo.out.txt)...

I downloaded the latest go-plus.owl from http://purl.obolibrary.org/obo/go/extensions/go-plus.owl and now I get the same error mentioned in geneontology/go-ontology#17263

Hi Jim, I started a new job so didn't have time to follow up, but I am running the command currently. How much memory and how long do you think...

I misspoke, we have a torque based cluster with high-memory/high-core nodes in the cluster, and I am trying to run this only on a single node, but with qsub. I...

Hi Francesco, I started by setting up the directory structure and everything using the interactive session, and while it was running blast I quit annocript. I then used annocript_executor.pl script...

I am stretched for time right now. Will do it sometime over this week. I have to dig for my notes on this.