Warren Winfried "Winni" Kretzschmar

I would like to configure my circos plots to center on when I create them. It looks like there's a `g` element with a `.all` class that gets a `transform`...

Add docs for mc-stan.org

7

# Feature request I am adding this issue to let people know that I am starting work on importing documentation for mc-stan.org. I had previously proposed this documentation on the...

I would like to change the header entry for the color name in a Cortex file. Is there a way to do this with Mccortex?

I think I have encountered a bug in `mccortex join` when I use it with the `--sort` output option. Here is what I mean: ```bash echo -e '>1\nCCCGGG' > 1.fa...

kallisto bus on SMART-seq3 data

8

I would like to run `kallisto bus` on Smart-seq3 data. The data consists of paired-end reads with a UMI at the start of the first read and no cell barcode....

no reads pseudoalign when reads are the same length as transcripts in index or of length 3?

2

I have put a small example on [this gist].(https://gist.github.com/winni2k/64efa2e354a70a72d8a70a5ac373cc49) When I run `run.sh`, I get the following output: ```bash 0 reads pseudoalign [build] loading fasta file transcripts.fa [build] k-mer length:...

I have a Smart-seq3 data set in which I would like to quantify isoforms after collapsing UMIs. I think this could in principle be done in the kallisto | bustools...

NA in likelihood ratio test with small number of transcripts

6

This is a continuation of a discussion started in #68. I am moving it here because it appears that my problem has a different cause from the what appears to...

Possible bug when using subcommands with single option that is part of [options]

1

Sorry for the bad title of this issue. Also thanks for this awesome piece of code. I'm not sure if this is expected behavior. When I use the following specification...