John Wiedenhoeft

Thanks! I've sent you an email :-)

I second this request, though I think HPC servers would actually benefit from a more general, greedy model (not sure this would justify opening a new feature request). Say you...

So, I dug a bit deeper. It appears that survfit.summary() does not report entry times for predictors, just event times, and dropout times if the appropriate option is provided. You...

Here is a workaround. Note that this fixes only n.risk, not percentages and the like: fix_risk_table % unique() res_table % mutate(across({{varname}}, as_factor)) %>% group_by({{varname}}) %>% summarize(n.risk=as.double(n())) %>% mutate(time=t) %>% bind_rows(res_table)...

Gladly, thanks for the quick response! @1-38891657--:1-38891451-:::::::::::3123365MA==:1/1 TTTTGCAATTTCTATGAAGGGTTCGATTATCCCCATTACAGGAACAGAGGCAACTATGTCTGTGGGAAGGGACTCTTTAGTTTATTGACCATTTAAATATAAGAACGCTAATATTTCACTCTGAGATAAAATAATTCACTTGTTTATAGT + FAFFFKKKKKKKKKKKKKKKKKKKFKKKAK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKFKFKKKKKKKK

This happens within the first 8 lines for me. Strangely enough, If I only keep one record (first 4 lines), I get: `Failed to parse the options: /opt/src/iSAAC/iSAAC-03.17.03.01/src/c++/lib/io/FastqReader.cpp(158): Throw in...

I think VarSim uses Java's gzip. However, the 10K file was compressed using a standard gzip 1.4, both with the same result. I'm using gcc. ldd yields: linux-vdso.so.1 => (0x00007fff437ff000)...

I don't know about the libz, tbh. The machine is quite old, I don't know if anyone remembers who installed things how and where ;-) For the box link I...

Thanks! Well, we seem to be getting somewhere: it runs, but complains that the index version is to old (version 3, built with iSAAC 1.14.02.10). Following the install instructions, I've...

Thanks, I'll check it out. I have 260GB RAM and 48 cores, with several terabytes of disk space, so this should be fine. However, strangely enough, the old iSAAC-01 aiignmer...