wgao688

Hi Xiaojie, Thank you for making the very useful dynast pipeline. We use it a lot in our analysis. One issue I have running into is that dynast count is...

Hi, thanks for developing this software! I am analyzing a relatively large dataset (~200 K cells) coming from multiple batches so there is a strong batch effect that I am...

Count matrix to cistopic link broken + scalability to large datasets question

5

Hi, I am trying to take a peak by count matrix generated using another software (SnapATAC2) which similar to ArchR produces a tile matrix and make this compatible with SCENIC+....

Error in line 97 with extra command on that line that is moved to line 98

Running GSEA for for mouse Liana x tensor-cell2cell

1

I am trying to run this code for a mouse dataset (https://ccc-protocols.readthedocs.io/en/latest/notebooks/ccc_R/QuickStart.html): ``` # Generate list with ligand-receptors pairs in DB lr_pairs % select(ligand = source_genesymbol, receptor = target_genesymbol) lr_list...

Installation issue on Google colab with GPU

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Hi, I am running liana+ and scripts that formerly worked (as of 2 weeks ago) but are now running into issues with numpy in Google colab, using the T4 GPU...

Which version of dynast corresponds to the tutorials?

1

Hi dynast developer team, Thanks for making this great package! I am running some of the examples and getting issues with several functions not being present. I downloaded version 1.4.2...