werhoog
werhoog
yeah, thanks for your good quesiton.I also got trouble in understanding what the function of such python script ? Is it the figure out where are all of other interaction...
yeah,got it . expect for your next release.
I have the same problem. It is more meaningful to use allValidPairs other than *.*pairs from the output file of HiC-Pro. But when I tried to discard other *pairs file...
I check it many times. But I cannot find any problems. Why?
hichipper --out hichipperpol21 yaml/one.yaml --macs2-string -q 0.0001 --extsize 147 --nomodel --macs2-genome mm --peak-pad 1000 --merge-gap 1000 --keep-temp-files --make-ucsc
Yean, I think it is I only pass "-p" that caused this problem. So I pass --macs2-string -q 0.0001 --extsize 147 --nomodel . And it said "Error: no such option:...
I guess I have solved it by moderate cli.py from 0.01 to 0.0001 . And this program runs well. Thank you all the same. By the way, if I want...
I didn't do anything but change the scripy of cli.py under hichipper fold. Thant is to say ,I changed the default parameter of 0.01 to 0.0001.