Andrea Watson

## Short description of the problem `anvi-pan-genome` produced the following error: ``` [06 Jan 21 17:03:09 DIAMOND] Un-uniqueing the tabular output ... Traceback (most recent call last): File "/project2/meren/VIRTUAL-ENVS/anvio-master/anvio/bin/anvi-pan-genome", line...

Hello, Thank you for the great tool! I was wondering, is there a way to tell if fastp stopped running prematurely? If I cancel the command before it finishes running,...

[BUG] GFF3 output file does not contain sequence-region name

2

**Describe the bug** The .gff (GFF3) output of the PGAP pipeline produces GFF3 files that do not contain the name of the sequence-region on the ##sequence-region line. This hurts downstream...

Feature request: allow directory paths for LongFastQ input

2

### Description of feature Many labs doing ONT sequencing generate basecalled/demultiplexed FASTQ output split into multiple files in the same directory (this is in fact the default behavior of MinKNOW...