Niklas Wahl

I just updated with the new folder structure and dose engines. Will make a quick review for @amitantony and @lisaseckler to consider.

Difficult to tell remotely what is going wrong, the error message is not that instructive. And it is very weird that it fails after 229 iterations. It seems to fail...

Thanks for that PR. Please make sure that standard parameters are not affected, if possible. Then I will review.

Before we go into that in detail - do you already have problems reading the CT or is it about dose calculation and optimization? Some meta information would also be...

Hi, the CT sounds not too big, so I am a bit wondering about the computational resources needed. How does your plan geometry look like? Apart from that, matRad should...

Your mapping seems correct, and I don't agree that this is not "logical". matRad does not use an analytic SOBP-Formula to determine weights, which would give you monotonic increasing weights,...

matRad has no builtin function to do that, only for HU -> rSP / rED lookup. You should look into [Schneider et al (2000)](https://doi.org/10.1088/0031-9155/45/2/314) to figure out how to do...

The TG119 phantom image includes a lot of air (which is at ~-1000), but the water phantom itself has consistently values a bit higher than 0 (between 0-30 HU). This...

I think you are refering to the function in #561 ? We have not reviewed this one yet, so I can't really comment on that one yet. @remocristoforetti will maybe...

In the master version (lastest release and master branch), protons can only be optimized for physical dose or with constant RBE. LEM IV is only integrated for the supplied carbon...