vzachari

icon company University of Kentucky icon location Lexington, KY icon location Assistant Professor, Aging Neuroscience and Machine Learning Laboratory, Department of Behavioral Science, College of Medicine, University of Kentucky

Results 2 comments of vzachari

FSL Version 6.04 maybe missing files using docker run --rm repronim/neurodocker:master generate singularity

Adding: bash /opt/fsl-6.0.4/etc/fslconf/fslpython_install.sh -f /opt/fsl-6.0.4 after sed -i '$isource $FSLDIR/etc/fslconf/fsl.sh' $ND_ENTRYPOINT in the singularity recipe file seems to fix the issue...but now the singularity image is 3GB larger 0_0 On...

Apply other Atlas

Greetings, There are a couple of ways to use additional ROIs with Ironsmith: 1) ATLAS/ROIs are in MNI space #Your mask in MNI space needs to be in $Subj/QSM/FreeSurf_QSM_Masks/MNI152_QSM singularity...