Vlad Savelyev
Vlad Savelyev
Tried to fix in the commit above, however still getting a (probably unrelated) error: ``` sequana_coverage --input samtools_depth.bed --window-median 1001 -r /g/data3/gx8/extras/umccrise/genomes/GRCh37/GRCh37.fa -c 21 INFO [sequana.bamtools]: Reading samtools_depth.bed. This may...
That's right, that's the master branch. More specifically, I initially had this issue with the installation from bioconda, and afterwards I cloned the master branch and the issue reproduced there...
We also found y-axis shift rather confusing for users and slightly redesigned the viewer. Now all blocks are positioned on the same y-coordinate. We will think about possibility of mapping...
+1 to this request - it would be really great to have sample fields available for processing.
It would be fantastic to have Conpair functionality in somalier (contamination, handling copy number variation). Conpair is great in what it's doing, but the codebase looks abandoned and one wouldn't...
@niemasd, unfortunately, that doesn't work either.
@rpetrovski, I checked, they are the same sizes
Hey! > I wanted to filter out some columns to be included into the report but didn't find a good way to do it, do you have any tips on...
What if we just set `xmax` to the highest coverage where all values are non-zero? See the update of the PR. Seems to work nicely.
@dfornika, getting back to this PR, hopefully are still keen to get it merged! Speaking about distinguishing Kraken and Bracken reports, currently the search patterns are basically identical (except for...