Vinay Kartha

Same issue here, testing on tutorial data. Any fix yet?

Sorry, follow up to that, here are the QC logs prior to the markers being processed and that error being thrown: NOTICE [2020/10/19 20:10:31] - Finished reading 7527981 markers from...

Runnning into this issue currently and trying the above comment, it can't find `correct_alternative_cosine`: `NameError: name 'correct_alternative_cosine' is not defined` tried to change it to `pynndescent.distances.correct_alternative_cosine` but that gave the...

Hi there - random question, but for some reason, after applying this plotting solution, it specifically then leads to an error being thrown when the adata object is written (I...

I'm still dealing with this issue, at the very least is it possible to flag what the problematic obs column is? Running obs.dtypes() shows I have a mix of int/float32/float64/category...

Same issue here, just following up that I can't install LianaR due to this OmnipathR dependency installation failure UPDATE: Updating tidyr seems to have resolved this installation issue, at least...

From a quick scan, it appears to be under `ks_rowscore`, line 96 ``` # KS is a ranked-based method # So we need to sort input_score from highest to lowest...

Hi @tetomonti , I think that was what I was mentioning - regardless of the input vector (order) you get the same meta-feature, and I think it's because of that...

I see - so there's no way of telling it what order to use, and if you want to flip the sign of the search we have to artifically negate...

Makes sense, thanks @tetomonti. Still wondering though, why not (in the case of rank-based approaches) assume the input is pre-ranked so that values need not be altered at all? (similar...