Vivek Ruhela

When I trpe the command: `import pixiedust` I got the following error: `Pixiedust database opened successfully` `Pixiedust version 1.1.15` `---------------------------------------------------------------------------` `ImportError Traceback (most recent call last)` ` in ` `---->...

Speedseq is runnning infinitely

1

Hello, I am trying to get somatic mutations from `speedseq somatic` but it has been more than 24 hours but it is still running and no output is generated. Here...

I am trying to get somatic mutations using speedseq somatic function. But everytime I am getting an error of mismatch line length. I am using hg19 fasta file from UCSC....

Not able to see any result

8

Hello, I've followed every instruction as it is but in the end I am not able to see any result on the browser. I have pulled the docker successfully. I...

I am trying to add MarketTechnicals using command `@v1.7) pkg> add https://github.com/JuliaQuant/MarketTechnicals.jl` but unable to install it. The error message is shown bwlow: `(@v1.7) pkg> add https://github.com/JuliaQuant/MarketTechnicals.jl` `Updating git-repo` `https://github.com/JuliaQuant/MarketTechnicals.jl`...

Error: Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD

1

I am trying to perform cell annotation using Mapquery using seurat object. I am following the reference from [here](https://github.com/immunogenomics/symphony/blob/main/vignettes/Seurat.ipynb). I am facing the following error in Mapquery: `Error: Mat::init(): requested...

Require snvboxGenes.fa file

1

Hello, I am using the 2020+ tool to identify the potential candidate driver gene. I can download the required files, such as `snvboxGenes.bed` or `scores.tar.gz`, but I am not able...

MapQuery: data.frame(predicted.id = prediction.ids, prediction.score = as.matrix(prediction.scores)

2

I am trying to use MapQuery for reference-based mapping using the following code: seurat.reference