vincenzopennone

Hi, I have exactly the same issue, however, I'm sure I have Bio::SeqIO installed. For some reason filter_sequences_by_length.pl doesn't find it. How can this be fixed? Thanks

Hi, I'm facing exactly the same issue, unfortunately removing tormes and cleaning didn't change anything. Conda is updated, but nothing... Any help is much appreciated! Thanks Vincenzo

Hi Narciso, Thank you very much for your fast reply! I used the grep command as you suggested on the .yml file, but when I tried to create the conda...

Hi Narciso, Thanks a lot for your answer again! So, I followed your guidelines on cleaning and configuration of Conda channels, checked that I didn't have any old tormes env,...

[tormes-package-list.txt](https://github.com/nmquijada/tormes/files/7348544/tormes-package-list.txt) Hi Narciso, I have followed your guidelines and this time it seems that everything worked! I haven't checked yet if the software actually works, I'll spend some time over...

Hi Narciso, Thank you for all the explanations! It seems that everything is installed properly now, as I got this message at the end of the setup: [TORMES]: TORMES is...

Hi again Narciso! I tried to run tormes on a couple of isolates (one couple of reads and one assembled genome), but I get a strange error... This is what...

Ahahah, yes, unfortunately it was too early! This is what I got by running the scripts: -zsh /bin/zsh /bin/bash GNU bash, version 3.2.57(1)-release (x86_64-apple-darwin20) Copyright (C) 2007 Free Software Foundation,...

Hi Narciso! Thanks, I'm learning a lot from this conversation! So, running /bin/bash --version gives me: GNU bash, version 3.2.57(1)-release (x86_64-apple-darwin20) Copyright (C) 2007 Free Software Foundation, Inc. While running...

Hi Narciso, Yes, I didn't update bash in /bin because it was not recommended for mac... I've run the script to modify the shebang but I get an error: (tormes-1.3.0)...