Viljar Femoen

Type annotation in pyxem

2

**Is your feature request related to a problem? Please describe.** I am currently learning how to use the pyxem suite for template matching, and I noticed the lack of type...

Templatematching interactive result plot

16

--- name: Templatematching interactive result plot about: Adds function to interactively plot a template matching result with the data. Similar to the existing `plot_template_over_pattern`, but interactive. --- **Checklist** - [x]...

Depends upon #1018 --- Implement and expand upon declared member functions of `OrientationMap`, mainly for plotting --- **Checklist** - [ ] implementation steps - [ ] update the Changelog -...

Multi phase marker support for orientation map plots

9

--- Multi phase marker support for orientation map plots --- **Checklist** - [x] implementation steps - [ ] update the Changelog - [x] mark as ready for review **What does...

Remove trailing slash in HDF5 download url

2

Hi, I'm getting the following error when trying to install using bootstrap.py: ``` Installing HDF5... log file is /home/vife5188/cctbx_project/base_tmp/HDF5_install_log getting package hdf5-1.10.5.tar.bz2... downloading from https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src//hdf5-1.10.5.tar.bz2 : download failed with HTTP...

Add simple progress bar to simulations

4

#### Description of the change Adds a simple progress bar for simulations with `SimulationGenerator` #### Progress of the PR - [x] [Docstrings for all functions](https://github.com/numpy/numpy/blob/master/doc/example.py) - [x] Unit tests with...

Speed up simulations

4

#### Description of the change The scope of this has expanded a little. Now fixes a bug with the direct beam being added twice, implements #234, as well as speeding...

#### Description of the change Previously, Simulation2d.get_diffraction_pattern rounded coordinates down to nearest pixel in the output pattern, before adding a gaussian blur. This PR implements a more manual gaussian blurring,...

**Describe the bug** The new simulations with a Phase does not (necessarily) take symmetry into account when calculating intensities. Only the explicitly included atoms in the underlying structure are part...

Object3d.unique ordering

4

Hello! I have been playing around with diffsims' ReciprocalLatticeVector.unique, which uses Miller.unique, which again uses Object3d.unique. Specifically, I needed to be able to re-construct the initial array from the unique...