lunyu
lunyu
Hey Prof. Shang, The link to the `bio_embedding.txt` is broken. Do you have a new place to host that file? Or could you explain the format of the embedding file?...
When changing the sample code's year from 2016 to 2015, as below. ``` stock = Stock('AAPL') period = 'quarterly' # or 'annual', which is the default year = 2015 #...
**Is your feature request related to a problem? Please describe.** Hi, I wonder if the library currently supports batch mode prediction for protein-peptide interaction. I could not find such feature...
Hi, thanks for open sourcing this work! I am exploring the binder design (using the `peptide_binder_design.ipynb`) with pdb id `7BW1` with binder lengths between 6-8. What I have observed is...
**Describe the bug** It seems some drug-protein relations are missing after the parsing. An example is `Baricitinib`. Now when query the database, there is no protein interaction found for `Baricitinib`....
Hi Andrew, Do you have a lookup dictionary for the pretrained embeddings? I saw in the embedding file, the "medical concepts" are in format of "CXXXX", not sure if they...
Got the below error run running the `download.sh` file: ``` --2021-11-11 05:38:15-- https://docs.google.com/uc?export=download&confirm=&id=1Q2TCwPRrEPtI75IHJ9awbKI5FH3lJS0w Resolving docs.google.com (docs.google.com)... 142.250.190.14, 2607:f8b0:4009:809::200e Connecting to docs.google.com (docs.google.com)|142.250.190.14|:443... connected. HTTP request sent, awaiting response... 404 Not...
I noticed the parser returned the `doc-number` rather than `patent number` for the patents. Although one can search a patent using `doc-number`, I cannot find a mapping for `doc-number` vs....