Mike Vella

Traceback (most recent call last): File "socode.py", line 1261, in jpadilla() File "socode.py", line 401, in new_f ret_val = f(_args, *_kwargs) File "socode.py", line 523, in jpadilla print 'Forked {}...

A regression appears to have been introduced whereby whatever `index_size` variable is set to affects the number of overlaps comptued. This results in very small differences between the number of...

After `genome_simulator` prints out ```Simulating genome: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 120/120 [05:41

This branch provides functionality to score variant candidates using a GPU. Measured acceleration of overall polishing application is between 2x-10x and depends on score threshold and coverage.

No support for wheels

4

When running `pip install quast` I get the following error: ``` ERROR: Complete output from command /home/mike/virtualenvs/quastest/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-nv0esrne/quast/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7eg2xawh...

miniasm prints no gfa if PAF file contains self-mapped read

4

If the PAF file contains self-mapped reads like this: ``` 6cd9b4ce-556b-46f1-b3b4-bec47970595b 5929 0 5914 + 6cd9b4ce-556b-46f1-b3b4-bec47970595b 5929 0 5914 1974 0 255 ``` Then miniasm does not print a GFA...